New ads.

Sunday, January 19, 2020

In death of dinosaurs, it was all about the asteroid -- not volcanoes

Illustrated scene of dinosaurs and asteroid (stock image). | Credit: (c) lassedesignen / stock.adobe.com
Illustrated scene of dinosaurs and asteroid (stock image).

Volcanic activity did not play a direct role in the mass extinction event that killed the dinosaurs, according to an international, Yale-led team of researchers. It was all about the asteroid.
In a break from a number of other recent studies, Yale assistant professor of geology & geophysics Pincelli Hull and her colleagues argue in a new research paper in Science that environmental impacts from massive volcanic eruptions in India in the region known as the Deccan Traps happened well before the Cretaceous-Paleogene extinction event 66 million years ago and therefore did not contribute to the mass extinction.
Most scientists acknowledge that the mass extinction event, also known as K-Pg, occurred after an asteroid slammed into Earth. Some researchers also have focused on the role of volcanoes in K-Pg due to indications that volcanic activity happened around the same time.
"Volcanoes can drive mass extinctions because they release lots of gases, like SO2 and CO2, that can alter the climate and acidify the world," said Hull, lead author of the new study. "But recent work has focused on the timing of lava eruption rather than gas release."
To pinpoint the timing of volcanic gas emission, Hull and her colleagues compared global temperature change and the carbon isotopes (an isotope is an atom with a higher or lower number of neutrons than normal) from marine fossils with models of the climatic effect of CO2 release. They concluded that most of the gas release happened well before the asteroid impact -- and that the asteroid was the sole driver of extinction.
"Volcanic activity in the late Cretaceous caused a gradual global warming event of about two degrees, but not mass extinction," said former Yale researcher Michael Henehan, who compiled the temperature records for the study. "A number of species moved toward the North and South poles but moved back well before the asteroid impact."
Added Hull, "A lot of people have speculated that volcanoes mattered to K-Pg, and we're saying, 'No, they didn't.'"
Recent work on the Deccan Traps, in India, has also pointed to massive eruptions in the immediate aftermath of the K-Pg mass extinction. These results have puzzled scientists because there is no warming event to match. The new study suggests an answer to this puzzle, as well.
"The K-Pg extinction was a mass extinction and this profoundly altered the global carbon cycle," said Yale postdoctoral associate Donald Penman, the study's modeler. "Our results show that these changes would allow the ocean to absorb an enormous amount of CO2 on long time scales -- perhaps hiding the warming effects of volcanism in the aftermath of the event."
The International Ocean Discovery Program, the National Science Foundation, and Yale University helped fund the research.

Story Source:
Materials provided by Yale University. Original written by Jim Shelton. Note: Content may be edited for style and length.

Saturday, January 18, 2020

Water to calm down thirst

Water being poured in a glass

It's water that calms
down your thirst and
nothing in the world 
can overcome it. 

The mysterious, legendary giant squid's genome is revealed

Image result for The mysterious, legendary giant squid's genome is revealed

The mysterious, legendary giant squid's genome is revealed.


How did the monstrous giant squid -- reaching school-bus size, with eyes as big as dinner plates and tentacles that can snatch prey 10 yards away -- get so scarily big?
Today, important clues about the anatomy and evolution of the mysterious giant squid (Architeuthis dux) are revealed through publication of its full genome sequence by a University of Copenhagen-led team that includes scientist Caroline Albertin of the Marine Biological Laboratory (MBL), Woods Hole.
Giant squid are rarely sighted and have never been caught and kept alive, meaning their biology (even how they reproduce) is still largely a mystery. The genome sequence can provide important insight.
"In terms of their genes, we found the giant squid look a lot like other animals. This means we can study these truly bizarre animals to learn more about ourselves," says Albertin, who in 2015 led the team that sequenced the first genome of a cephalopod (the group that includes squid, octopus, cuttlefish, and nautilus).
Led by Rute da Fonseca at University of Copenhagen, the team discovered that the giant squid genome is big: with an estimated 2.7 billion DNA base pairs, it's about 90 percent the size of the human genome.
Albertin analyzed several ancient, well-known gene families in the giant squid, drawing comparisons with the four other cephalopod species that have been sequenced and with the human genome.
She found that important developmental genes in almost all animals (Hox and Wnt) were present in single copies only in the giant squid genome. That means this gigantic, invertebrate creature -- long a source of sea-monster lore -- did NOT get so big through whole-genome duplication, a strategy that evolution took long ago to increase the size of vertebrates.
So, knowing how this squid species got so giant awaits further probing of its genome.
"A genome is a first step for answering a lot of questions about the biology of these very weird animals," Albertin said, such as how they acquired the largest brain among the invertebrates, their sophisticated behaviors and agility, and their incredible skill at instantaneous camouflage.
"While cephalopods have many complex and elaborate features, they are thought to have evolved independently of the vertebrates. By comparing their genomes we can ask, 'Are cephalopods and vertebrates built the same way or are they built differently?'" Albertin says.
Albertin also identified more than 100 genes in the protocadherin family -- typically not found in abundance in invertebrates -- in the giant squid genome.
"Protocadherins are thought to be important in wiring up a complicated brain correctly," she says. "They were thought they were a vertebrate innovation, so we were really surprised when we found more than 100 of them in the octopus genome (in 2015). That seemed like a smoking gun to how you make a complicated brain. And we have found a similar expansion of protocadherins in the giant squid, as well."
Lastly, she analyzed a gene family that (so far) is unique to cephalopods, called reflectins. "Reflectins encode a protein that is involved in making iridescence. Color is an important part of camouflage, so we are trying to understand what this gene family is doing and how it works," Albertin says.
"Having this giant squid genome is an important node in helping us understand what makes a cephalopod a cephalopod. And it also can help us understand how new and novel genes arise in evolution and development."

Story Source:
Materials provided by Marine Biological Laboratory. Original written by Diana Kenney. Note: Content may be edited for style and length.

Mosquitoes engineered to repel dengue virus

Aedes aegypti mosquito (stock image). | Credit: (c) tacio philip / stock.adobe.com
Aedes aegypti mosquito (stock image).

An international team of scientists has synthetically engineered mosquitoes that halt the transmission of the dengue virus.
Led by biologists at the University of California San Diego, the research team describes details of the achievement in Aedes aegypti mosquitoes, the insects that spread dengue in humans, on January 16 in the journal PLOS Pathogens.
Researchers in UC San Diego Associate Professor Omar Akbari's lab worked with colleagues at Vanderbilt University Medical Center in identifying a broad spectrum human antibody for dengue suppression. The development marks the first engineered approach in mosquitoes that targets the four known types of dengue, improving upon previous designs that addressed single strains.
They then designed the antibody "cargo" to be synthetically expressed in female A. aegypti mosquitoes, which spread the dengue virus.
"Once the female mosquito takes in blood, the antibody is activated and expressed -- that's the trigger," said Akbari, of the Division of Biological Sciences and a member of the Tata Institute for Genetics and Society. "The antibody is able to hinder the replication of the virus and prevent its dissemination throughout the mosquito, which then prevents its transmission to humans. It's a powerful approach."
Akbari said the engineered mosquitoes could easily be paired with a dissemination system, such as a gene drive based on CRISPR/CAS-9 technology, capable of spreading the antibody throughout wild disease-transmitting mosquito populations.
"It is fascinating that we now can transfer genes from the human immune system to confer immunity to mosquitoes. This work opens up a whole new field of biotechnology possibilities to interrupt mosquito-borne diseases of man," said coauthor James Crowe, Jr., M.D., director of the Vanderbilt Vaccine Center at Vanderbilt University Medical Center in Nashville, Tenn.
According to the World Health Organization, dengue virus threatens millions of people in tropical and sub-tropical climates. Severe dengue is a leading cause of serious illness and death among children in many Asian and Latin American countries. The Pan American Health Organization recently reported the highest number of dengue cases ever recorded in the Americas. Infecting those with compromised immune systems, dengue victims suffer flu-like symptoms, including severe fevers and rashes. Serious cases can include life-threatening bleeding. Currently no specific treatment exists and thus prevention and control depend on measures that stop the spread of the virus.
"This development means that in the foreseeable future there may be viable genetic approaches to controlling dengue virus in the field, which could limit human suffering and mortality," said Akbari, whose lab is now in the early stages of testing methods to simultaneously neutralize mosquitoes against dengue and a suite of other viruses such as Zika, yellow fever and chikungunya.
"Mosquitoes have been given the bad rap of being the deadliest killers on the planet because they are the messengers that transmit diseases like malaria, dengue, chikungunya, Zika and yellow fever that collectively put 6.5 billion people at risk globally," said Suresh Subramani, professor emeritus of molecular biology at UC San Diego and global director of the Tata Institute for Genetics and Society (TIGS). "Until recently, the world has focused on shooting (killing) this messenger. Work from the Akbari lab and at TIGS is aimed at disarming the mosquito instead by preventing it from transmitting diseases, without killing the messenger. This paper shows that it is possible to immunize mosquitoes and prevent their ability to transmit dengue virus, and potentially other mosquito-borne pathogens."
Coauthors of the research include: UC San Diego graduate student Stephanie Gamez; Anna Buchman and Ming Li of the Section of Cell and Developmental Biology, Division of Biological Sciences, UC San Diego; Igor Antoshechkin of the California Institute of Technology, Shin-Hang Lee, Shin-Wei Wang and Chun-Hong Chen of the National Health Research Institutes (Taiwan); and Melissa Klein, Jean-Bernard Duchemin and Prasad Paradkar of CSIRO Health and Biosecurity.

Story Source:
Materials provided by University of California - San Diego. Original written by Mario Aguilera. Note: Content may be edited for style and length.

Billions of quantum entangled electrons found in 'strange metal'

Partial view of periodic table of the elements (stock image). | Credit: (c) concept w / stock.adobe.com
Partial view of periodic table of the elements (stock image).

In a new study, U.S. and Austrian physicists have observed quantum entanglement among "billions of billions" of flowing electrons in a quantum critical material.
The research, which appears this week in Science, examined the electronic and magnetic behavior of a "strange metal" compound of ytterbium, rhodium and silicon as it both neared and passed through a critical transition at the boundary between two well-studied quantum phases.
The study at Rice University and Vienna University of Technology (TU Wien) provides the strongest direct evidence to date of entanglement's role in bringing about quantum criticality, said study co-author Qimiao Si of Rice.
"When we think about quantum entanglement, we think about small things," Si said. "We don't associate it with macroscopic objects. But at a quantum critical point, things are so collective that we have this chance to see the effects of entanglement, even in a metallic film that contains billions of billions of quantum mechanical objects."
Si, a theoretical physicist and director of the Rice Center for Quantum Materials (RCQM), has spent more than two decades studying what happens when materials like strange metals and high-temperature superconductors change quantum phases. Better understanding such materials could open the door to new technologies in computing, communications and more.
The international team overcame several challenges to get the result. TU Wien researchers developed a highly complex materials synthesis technique to produce ultrapure films containing one part ytterbium for every two parts rhodium and silicon (YbRh2Si2). At absolute zero temperature, the material undergoes a transition from one quantum phase that forms a magnetic order to another that does not.
At Rice, study co-lead author Xinwei Li, then a graduate student in the lab of co-author and RCQM member Junichiro Kono, performed terahertz spectroscopy experiments on the films at temperatures as low as 1.4 Kelvin. The terahertz measurements revealed the optical conductivity of the YbRh2Si2 films as they were cooled to a quantum critical point that marked the transition from one quantum phase to another.
"With strange metals, there is an unusual connection between electrical resistance and temperature," said corresponding author Silke Bühler-Paschen of TU Wien's Institute for Solid State Physics. "In contrast to simple metals such as copper or gold, this does not seem to be due to the thermal movement of the atoms, but to quantum fluctuations at the absolute zero temperature."
To measure optical conductivity, Li shined coherent electromagnetic radiation in the terahertz frequency range on top of the films and analyzed the amount of terahertz rays that passed through as a function of frequency and temperature. The experiments revealed "frequency over temperature scaling," a telltale sign of quantum criticality, the authors said.
Kono, an engineer and physicist in Rice's Brown School of Engineering, said the measurements were painstaking for Li, who's now a postdoctoral researcher at the California Institute of Technology. For example, only a fraction of the terahertz radiation shined onto the sample passed through to the detector, and the important measurement was how much that fraction rose or fell at different temperatures.
"Less than 0.1% of the total terahertz radiation was transmitted, and the signal, which was the variation of conductivity as a function of frequency, was a further few percent of that," Kono said. "It took many hours to take reliable data at each temperature to average over many, many measurements, and it was necessary to take data at many, many temperatures to prove the existence of scaling.
"Xinwei was very, very patient and persistent," Kono said. "In addition, he carefully processed the huge amounts of data he collected to unfold the scaling law, which was really fascinating to me."
Making the films was even more challenging. To grow them thin enough to pass terahertz rays, the TU Wien team developed a unique molecular beam epitaxy system and an elaborate growth procedure. Ytterbium, rhodium and silicon were simultaneously evaporated from separate sources in the exact 1-2-2 ratio. Because of the high energy needed to evaporate rhodium and silicon, the system required a custom-made ultrahigh vacuum chamber with two electron-beam evaporators.
"Our wild card was finding the perfect substrate: germanium," said TU Wien graduate student Lukas Prochaska, a study co-lead author. The germanium was transparent to terahertz, and had "certain atomic distances (that were) practically identical to those between the ytterbium atoms in YbRh2Si2, which explains the excellent quality of the films," he said.
Si recalled discussing the experiment with Bühler-Paschen more than 15 years ago when they were exploring the means to test a new class of quantum critical point. The hallmark of the quantum critical point that they were advancing with co-workers is that the quantum entanglement between spins and charges is critical.
"At a magnetic quantum critical point, conventional wisdom dictates that only the spin sector will be critical," he said. "But if the charge and spin sectors are quantum-entangled, the charge sector will end up being critical as well."
At the time, the technology was not available to test the hypothesis, but by 2016, the situation had changed. TU Wien could grow the films, Rice had recently installed a powerful microscope that could scan them for defects, and Kono had the terahertz spectrometer to measure optical conductivity. During Bühler-Paschen's sabbatical visit to Rice that year, she, Si, Kono and Rice microscopy expert Emilie Ringe received support to pursue the project via an Interdisciplinary Excellence Award from Rice's newly established Creative Ventures program.
"Conceptually, it was really a dream experiment," Si said. "Probe the charge sector at the magnetic quantum critical point to see whether it's critical, whether it has dynamical scaling. If you don't see anything that's collective, that's scaling, the critical point has to belong to some textbook type of description. But, if you see something singular, which in fact we did, then it is very direct and new evidence for the quantum entanglement nature of quantum criticality."
Si said all the efforts that went into the study were well worth it, because the findings have far-reaching implications.
"Quantum entanglement is the basis for storage and processing of quantum information," Si said. "At the same time, quantum criticality is believed to drive high-temperature superconductivity. So our findings suggest that the same underlying physics -- quantum criticality -- can lead to a platform for both quantum information and high-temperature superconductivity. When one contemplates that possibility, one cannot help but marvel at the wonder of nature."
Si is the Harry C. and Olga K. Wiess Professor in Rice's Department of Physics and Astronomy. Kono is a professor in Rice's departments of Electrical and Computer Engineering, Physics and Astronomy, and Materials Science and NanoEngineering and the director of Rice's Applied Physics Graduate Program. Ringe is now at the University of Cambridge.
Additional co-authors include Maxwell Andrews, Maximilian Bonta, Werner Schrenk, Andreas Limbeck and Gottfried Strasser, all of the TU Wien; Hermann Detz, formerly of TU Wien and currently at Brno University; Elisabeth Bianco, formerly of Rice and currently at Cornell University; Sadegh Yazdi, formerly of Rice and currently at the University of Colorado Boulder; and co-lead author Donald MacFarland, formerly of TU Wien and currently at the University at Buffalo.
The research was supported by the European Research Council (ERC-227378), the Army Research Office (W911NF-14-1-0496, W911NF-17-1-0259, W911NF-14-1-0525), the Austrian Science Fund (FWF-W1243, P29279-N27, P29296-N27), the European Union's Horizon 2020 program (824109-EMP), the National Science Foundation (DMR-1720595, DMR-1920740, PHY-1607611), the Robert A. Welch Foundation (C-1411), Los Alamos National Laboratory and Rice University.

Story Source:
Materials provided by Rice University. Original written by Jade Boyd. Note: Content may be edited for style and length.

In death of dinosaurs, it was all about the asteroid -- not volcanoes

Illustrated scene of dinosaurs and asteroid (stock image). | Credit: (c) lassedesignen / stock.adobe.com
Illustrated scene of dinosaurs and asteroid (stock image).

Volcanic activity did not play a direct role in the mass extinction event that killed the dinosaurs, according to an international, Yale-led team of researchers. It was all about the asteroid.
In a break from a number of other recent studies, Yale assistant professor of geology & geophysics Pincelli Hull and her colleagues argue in a new research paper in Science that environmental impacts from massive volcanic eruptions in India in the region known as the Deccan Traps happened well before the Cretaceous-Paleogene extinction event 66 million years ago and therefore did not contribute to the mass extinction.
Most scientists acknowledge that the mass extinction event, also known as K-Pg, occurred after an asteroid slammed into Earth. Some researchers also have focused on the role of volcanoes in K-Pg due to indications that volcanic activity happened around the same time.
"Volcanoes can drive mass extinctions because they release lots of gases, like SO2 and CO2, that can alter the climate and acidify the world," said Hull, lead author of the new study. "But recent work has focused on the timing of lava eruption rather than gas release."
To pinpoint the timing of volcanic gas emission, Hull and her colleagues compared global temperature change and the carbon isotopes (an isotope is an atom with a higher or lower number of neutrons than normal) from marine fossils with models of the climatic effect of CO2 release. They concluded that most of the gas release happened well before the asteroid impact -- and that the asteroid was the sole driver of extinction.
"Volcanic activity in the late Cretaceous caused a gradual global warming event of about two degrees, but not mass extinction," said former Yale researcher Michael Henehan, who compiled the temperature records for the study. "A number of species moved toward the North and South poles but moved back well before the asteroid impact."
Added Hull, "A lot of people have speculated that volcanoes mattered to K-Pg, and we're saying, 'No, they didn't.'"
Recent work on the Deccan Traps, in India, has also pointed to massive eruptions in the immediate aftermath of the K-Pg mass extinction. These results have puzzled scientists because there is no warming event to match. The new study suggests an answer to this puzzle, as well.
"The K-Pg extinction was a mass extinction and this profoundly altered the global carbon cycle," said Yale postdoctoral associate Donald Penman, the study's modeler. "Our results show that these changes would allow the ocean to absorb an enormous amount of CO2 on long time scales -- perhaps hiding the warming effects of volcanism in the aftermath of the event."
The International Ocean Discovery Program, the National Science Foundation, and Yale University helped fund the research.

Story Source:
Materials provided by Yale University. Original written by Jim Shelton. Note: Content may be edited for style and length.

Wednesday, January 15, 2020

African grey parrots spontaneously 'lend a wing'

African grey parrots (stock image). | Credit: (c) PinkBlue / stock.adobe.com
African grey parrots (stock image).

People and other great apes are known for their willingness to help others in need, even strangers. Now, researchers reporting in Current Biology on January 9 have shown for the first time that some birds -- and specifically African grey parrots -- are similarly helpful.
"We found that African grey parrots voluntarily and spontaneously help familiar parrots to achieve a goal, without obvious immediate benefit to themselves," says study co-author Désirée Brucks of the Max Planck Institute for Ornithology, Germany.
Parrots and crows are known for having large brains relative to the size of their bodies and problem-solving skills to match. For that reason, they are sometimes considered to be "feathered apes," explain Brucks and study co-author Auguste von Bayern.
However, earlier studies showed that, despite their impressive social intelligence, crows don't help other crows. In their new study, Brucks and von Bayern wondered: what about parrots?
To find out, they enlisted several African grey parrots and blue-headed macaws. Both parrot species were eager to trade tokens with an experimenter for a nut treat. But, their findings show, only the African grey parrots were willing to transfer a token to a neighbor parrot, allowing the other individual to earn a nut reward.
"Remarkably, African grey parrots were intrinsically motivated to help others, even if the other individual was not their friend, so they behaved very 'prosocially,'" von Bayern says. "It surprised us that 7 out of 8 African grey parrots provided their partner with tokens spontaneously -- in their very first trial -- thus without having experienced the social setting of this task before and without knowing that they would be tested in the other role later on. Therefore, the parrots provided help without gaining any immediate benefits and seemingly without expecting reciprocation in return."
Importantly, she notes, the African grey parrots appeared to understand when their help was needed. When they could see the other parrot had an opportunity for exchange, they'd pass a token over. Otherwise, they wouldn't.
The parrots would help out whether the other individual was their "friend" or not, she adds. But, their relationship to the other individual did have some influence. When the parrot in need of help was a "friend," the helper transferred even more tokens.
The researchers suggest the difference between African greys and blue-headed macaws may relate to differences in their social organization in the wild. Despite those species differences, the findings show that helping behavior is not limited to humans and great apes but evolved independently also in birds.
It remains to be seen how widespread helping is across the 393 different parrot species and what factors may have led to its evolution. The researchers say that further studies are required to investigate the underlying mechanisms of the parrots' helping behavior. For instance, how do parrots tell when one of their peers needs help? And, what motivates them to respond?

Story Source:
Materials provided by Cell Press. Note: Content may be edited for style and length.